Basic Information
Locus ID:
Lb3G20438
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
acid phosphatase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 327376128 | 327388445 | + | Lb3G20438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 142,958.67 Da | 38.78 | 82.05 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 960 | 1079 | 1.49004E-23 | IPR044730 |
| CDD | cd06222 | RNase_H_like | 960 | 1079 | 1.49004E-23 | IPR044730 |
| Pfam | PF13456 | Reverse transcriptase-like | 961 | 1081 | 7.5E-22 | IPR002156 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1171 | 1240 | 3.8E-15 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1171 | 1240 | 3.8E-15 | IPR000504 |
| Pfam | PF13456 | Reverse transcriptase-like | 961 | 1081 | 7.5E-22 | IPR002156 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 958 | 1084 | 7.71E-14 | IPR012337 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 1130 | 1244 | 4.03E-24 | IPR035979 |
| SUPERFAMILY | SSF56219 | DNase I-like | 52 | 230 | 1.25E-19 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 958 | 1084 | 7.71E-14 | IPR012337 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 1130 | 1244 | 4.03E-24 | IPR035979 |
| SUPERFAMILY | SSF56219 | DNase I-like | 52 | 230 | 1.25E-19 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 958 | 1085 | 2.7E-14 | IPR036397 |
| Gene3D | G3DSA:3.30.70.330 | - | 1122 | 1247 | 3.9E-24 | IPR012677 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 37 | 230 | 9.8E-21 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 958 | 1085 | 2.7E-14 | IPR036397 |
| Gene3D | G3DSA:3.30.70.330 | - | 1122 | 1247 | 3.9E-24 | IPR012677 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 37 | 230 | 9.8E-21 | IPR036691 |
| SMART | SM00360 | rrm1_1 | 1170 | 1243 | 4.7E-22 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 1170 | 1243 | 4.7E-22 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 1169 | 1247 | 16.500134 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 1169 | 1247 | 16.500134 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1130 | 1170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 932 | 953 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1149 | 1170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 932 | 953 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1149 | 1170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1130 | 1170 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07350.2 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021810244.1 | uncharacterized protein LOC110753617 [Prunus avium] | 0 |
| P0C2F6 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6P5S3L0 | uncharacterized protein LOC110753617 OS=Prunus avium OX=42229 GN=LOC110753617 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |