Basic Information
Locus ID:
Lb3G20359
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 322952004 | 322954167 | - | Lb3G20359 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 74,687.83 Da | 49.84 | 64.95 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 482 | 558 | 5.22493E-46 | - |
| CDD | cd11449 | bHLH_AtAIB_like | 482 | 558 | 5.22493E-46 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 26 | 209 | 3.7E-43 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 489 | 534 | 1.2E-9 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 26 | 209 | 3.7E-43 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 489 | 534 | 1.2E-9 | IPR011598 |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 316 | 385 | 3.4E-6 | - |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 316 | 385 | 3.4E-6 | - |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 488 | 556 | 9.29E-18 | IPR036638 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 488 | 556 | 9.29E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 477 | 564 | 1.6E-16 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 477 | 564 | 1.6E-16 | IPR036638 |
| SMART | SM00353 | finulus | 491 | 540 | 2.5E-15 | IPR011598 |
| SMART | SM00353 | finulus | 491 | 540 | 2.5E-15 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 485 | 534 | 16.831081 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 485 | 534 | 16.831081 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 585 | - | - |
| Coils | Coil | Coil | 531 | 558 | - | - |
| Coils | Coil | Coil | 326 | 360 | - | - |
| Coils | Coil | Coil | 531 | 558 | - | - |
| Coils | Coil | Coil | 326 | 360 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32640.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue lightmediated photomorphogenic growth and blue and far-red-lightregulated gene expression. Positive regulator of lateral root formation. Regulates diverse JA-dependent functions. Negatively regulates Trp metabolism and biosynthesis of Trp-derived secondary metabolites. Positively regulates flavonoid biosynthesis, resistance to insects, and response to oxidative stress. Regulates other transcription factors, and negatively regulates its own expression. | 0 |
| RefSeq | XP_034709230.1 | transcription factor MYC2-like [Vitis riparia] | 0 |
| A0A3Q7HRZ6 | Transcription factor MYC2 OS=Solanum lycopersicum OX=4081 GN=MYC2 PE=1 SV=1 | 0 | |
| TrEMBL | Q4JKA7 | Basic helix-loop-helix transcription factor protein OS=Rheum australe OX=284363 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology