Basic Information
Locus ID:
Lb3G20356
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 322410275 | 322411629 | + | Lb3G20356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 29,392.83 Da | 42.86 | 87.25 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 117 | 161 | 9.71257E-8 | IPR018392 |
| CDD | cd00118 | LysM | 117 | 161 | 9.71257E-8 | IPR018392 |
| Pfam | PF01476 | LysM domain | 119 | 162 | 3.8E-7 | IPR018392 |
| Pfam | PF00646 | F-box domain | 50 | 79 | 3.6E-5 | IPR001810 |
| Pfam | PF00646 | F-box domain | 50 | 79 | 3.6E-5 | IPR001810 |
| Pfam | PF01476 | LysM domain | 119 | 162 | 3.8E-7 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 117 | 163 | 6.28E-7 | IPR036779 |
| SUPERFAMILY | SSF81383 | F-box domain | 50 | 114 | 9.42E-10 | IPR036047 |
| SUPERFAMILY | SSF54106 | LysM domain | 117 | 163 | 6.28E-7 | IPR036779 |
| SUPERFAMILY | SSF81383 | F-box domain | 50 | 114 | 9.42E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 48 | 83 | 8.8E-8 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 110 | 167 | 1.8E-13 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 110 | 167 | 1.8E-13 | IPR036779 |
| Gene3D | G3DSA:1.20.1280.50 | - | 48 | 83 | 8.8E-8 | - |
| SMART | SM00257 | LysM_2 | 118 | 162 | 2.1E-4 | IPR018392 |
| SMART | SM00257 | LysM_2 | 118 | 162 | 2.1E-4 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 117 | 161 | 11.991409 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 117 | 161 | 11.991409 | IPR018392 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55000.1 | peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_024959914.1 | F-box protein At1g55000 [Cynara cardunculus var. scolymus] | 0 |
| Q9FZ32 | F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1 | 0 | |
| TrEMBL | A0A124SF04 | F-box domain, cyclin-like protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_019993 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29933 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10435 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005792 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g081420 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17071, Sbi_jg61621 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg345 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008410, GOSA_00008411 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl24554, Sgl24555, Sgl29717 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010210, gene:ENSEOMG00000030682 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0008590, CQ.Regalona.r1.4BG0008740 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30083480, pistato.v30084180 |
| Apiaceae | Apium graveolens | 1 | Ag1G00474 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G004970 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715745 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1377.V1.1, AsparagusV1_08.1989.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G32450 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G55000.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10023646m.g.v1.0, Thhalv10024156m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | SpUn0004_0090.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g060210.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1203 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g09400 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0050s00031.v1.0, Dusal.0530s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g14200 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2439 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017847, Pov_00039259 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06690, Lb3G20356 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.939, BH01.1075, CH01.1121 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0220170, gene-QOZ80_3BG0265370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0335820.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062719 |
| Poaceae | Oryza coarctata | 1 | Oco06G021770 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g49250.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G114400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104825 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G007640, Chr04G026420, Chr07G025420, Chr12G029750 |
| Poaceae | Thinopyrum elongatum | 4 | Tel3E01G700400, Tel4E01G071100, Tel4E01G071500 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG042790, gene_TRIDC4BG006180 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS4A02G275700.1, TraesCS4B02G038000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb054020_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15832 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3013 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1230, evm.TU.LG20.654 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g16840 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60387.5, evm.TU.60387.6, evm.TU.60388.5 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-2771, nbisL1-mrna-2773, nbisL1-mrna-2811 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7200 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13692 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.64 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006096 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12970 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16169 |
| Salicaceae | Populus euphratica | 2 | populus_peu13407, populus_peu15738 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645912 |
| Solanaceae | Solanum chilense | 1 | SOLCI006609300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008578 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7224 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0918 |
| Zosteraceae | Zostera marina | 1 | Zosma03g29600.v3.1 |