Basic Information
Locus ID:
Lb3G20344
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
ABC transporter D family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 321714680 | 321716392 | + | Lb3G20344 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 17,787.42 Da | 46.37 | 103.01 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 15 | 43 | 2.67E-8 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 15 | 43 | 2.67E-8 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 11 | 101 | 9.4E-7 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 11 | 101 | 9.4E-7 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 156 | 8.852844 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 156 | 8.852844 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39850.1 | peroxisomal ABC transporter 1. Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome. | 0 |
| RefSeq | XP_021912767.1 | LOW QUALITY PROTEIN: ABC transporter D family member 1-like [Carica papaya] | 0 |
| Q94FB9 | ABC transporter D family member 1 OS=Arabidopsis thaliana OX=3702 GN=ABCD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MAG6 | ABC transporter D family member 1-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg36298 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl04570, Sgl11017, Sgl21357, Sgl26687, Sgl53601, Sgl58861 |
| Apiaceae | Apium graveolens | 1 | Ag6G00064 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.844.V1.1 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20344 |
| Poaceae | Echinochloa crus-galli | 1 | AH04.397 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0545240.1 |