Basic Information
Locus ID:
Lb3G20268
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 311530861 | 311538767 | - | Lb3G20268 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 99,070.88 Da | 46.58 | 80.05 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 720 | 871 | 2.46655E-61 | - |
| CDD | cd02674 | Peptidase_C19R | 720 | 871 | 2.46655E-61 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 281 | 870 | 4.0E-83 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 281 | 870 | 4.0E-83 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 279 | 872 | 9.61E-110 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 279 | 872 | 9.61E-110 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 693 | 876 | 4.6E-57 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 267 | 506 | 3.0E-67 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 693 | 876 | 4.6E-57 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 267 | 506 | 3.0E-67 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 281 | 873 | 56.912113 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 281 | 873 | 56.912113 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 282 | 297 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 282 | 297 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 816 | 833 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 816 | 833 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 248 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_021861826.1 | ubiquitin carboxyl-terminal hydrolase 8 [Spinacia oleracea] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QF22 | Ubiquitin carboxyl-terminal hydrolase OS=Spinacia oleracea OX=3562 GN=SOVF_186300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology