Basic Information
Locus ID:
Lb3G20266
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 311425515 | 311434936 | + | Lb3G20266 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 93,293.48 Da | 46.63 | 76.19 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 82 | 179 | 3.32407E-24 | IPR002083 |
| CDD | cd00121 | MATH | 82 | 179 | 3.32407E-24 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 181 | 501 | 1.86374E-152 | - |
| CDD | cd02659 | peptidase_C19C | 181 | 501 | 1.86374E-152 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 602 | 799 | 6.5E-54 | IPR024729 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 602 | 799 | 6.5E-54 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 179 | 496 | 3.1E-40 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 179 | 496 | 3.1E-40 | IPR001394 |
| Pfam | PF00917 | MATH domain | 77 | 179 | 1.0E-11 | IPR002083 |
| Pfam | PF00917 | MATH domain | 77 | 179 | 1.0E-11 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 180 | 518 | 1.88E-84 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 77 | 179 | 6.54E-26 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 77 | 179 | 6.54E-26 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 180 | 518 | 1.88E-84 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 178 | 500 | 9.6E-79 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 663 | 778 | 1.3E-38 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 59 | 177 | 1.0E-31 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 59 | 177 | 1.0E-31 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 663 | 778 | 1.3E-38 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 178 | 500 | 9.6E-79 | - |
| SMART | SM00061 | math_3 | 33 | 162 | 3.9E-4 | IPR002083 |
| SMART | SM00061 | math_3 | 33 | 162 | 3.9E-4 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 50 | 181 | 23.945103 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 175 | 499 | 34.967628 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 50 | 181 | 23.945103 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 175 | 499 | 34.967628 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 415 | 432 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 415 | 432 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_038900703.1 | ubiquitin carboxyl-terminal hydrolase 12-like [Benincasa hispida] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4DYF3 | ubiquitinyl hydrolase 1 OS=Cucumis melo OX=3656 GN=LOC103491595 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology