halophFGD

Basic Information

Locus ID: Lb3G19896

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: BRCA1-associated protein 2

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr03	269823358	269824860	-	Lb3G19896

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.67	18,729.28 Da	42.45	86.87	-0.44

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05212	Protein of unknown function (DUF707)	87	107	5.0E-6	IPR007877
Pfam	PF05212	Protein of unknown function (DUF707)	87	107	5.0E-6	IPR007877
Coils	Coil	Coil	118	153	-	-
Coils	Coil	Coil	118	153	-	-

KEGG Pathway

KO Term:

K10632 (BRCA1-associated protein [EC:2.3.2.27])

Pathway:

ko04014 (Ras signaling pathway) map04014 (Ras signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G26000.1	zinc finger (C3HC4-type RING finger) family protein.
RefSeq	XP_010693197.1	BRAP2 RING ZnF UBP domain-containing protein 2 [Beta vulgaris subsp. vulgaris]
TrEMBL	A0A3L6RU41	BRCA1-associated protein OS=Panicum miliaceum OX=4540 GN=C2845_PM11G00790 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Plumbaginaceae	Limonium bicolor	5	Lb1G08037, Lb3G19896, Lb4G25131, Lb5G27843, Lb8G36618