Basic Information
Locus ID:
Lb3G19854
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 265183696 | 265187175 | + | Lb3G19854 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 38,869.37 Da | 25.63 | 84.42 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 7 | 227 | 1.6E-73 | IPR023801 |
| Pfam | PF00850 | Histone deacetylase domain | 7 | 227 | 1.6E-73 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 2 | 284 | 1.73E-102 | IPR023696 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 2 | 284 | 1.73E-102 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 296 | 2.3E-115 | IPR037138 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 296 | 2.3E-115 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 1 | 344 | 5.7E-172 | IPR003084 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 1 | 344 | 5.7E-172 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 126 | 139 | 4.2E-40 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 4 | 21 | 4.2E-40 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 25 | 45 | 4.2E-40 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 143 | 161 | 4.2E-40 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 66 | 82 | 4.2E-40 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 79 | 94 | 1.6E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 47 | 70 | 1.6E-22 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 25 | 45 | 4.2E-40 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 126 | 139 | 4.2E-40 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 4 | 21 | 4.2E-40 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 143 | 161 | 4.2E-40 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 79 | 94 | 1.6E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 47 | 70 | 1.6E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 165 | 175 | 1.6E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 165 | 175 | 1.6E-22 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 66 | 82 | 4.2E-40 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 344 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_034709400.1 | histone deacetylase 9 isoform X2 [Vitis riparia] | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YGK8 | Histone deacetylase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology