halophFGD

Basic Information

Locus ID: Lb3G19564

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Serine threonine-protein phosphatase 7 long form homolog

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr03	235618847	235628071	+	Lb3G19564

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.88	126,458.82 Da	51.08	74.00	-0.49

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09272	RNase_HI_RT_Ty1	480	549	9.6072E-24	-
CDD	cd09272	RNase_HI_RT_Ty1	480	549	9.6072E-24	-
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	176	417	6.3E-70	IPR013103
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	176	417	6.3E-70	IPR013103
Pfam	PF10536	Plant mobile domain	551	634	7.9E-21	IPR019557
Pfam	PF10536	Plant mobile domain	551	634	7.9E-21	IPR019557
SUPERFAMILY	SSF56672	DNA/RNA polymerases	176	549	1.4E-23	IPR043502
SUPERFAMILY	SSF56672	DNA/RNA polymerases	176	549	1.4E-23	IPR043502
MobiDBLite	mobidb-lite	consensus disorder prediction	1070	1090	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1070	1101	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	80	102	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	80	107	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	987	1014	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1070	1101	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	987	1014	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	896	932	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	80	107	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1070	1090	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	80	102	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	896	932	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23160.2	-
RefSeq	XP_016448586.1	PREDICTED: uncharacterized protein LOC107773685 [Nicotiana tabacum]
Swiss-Prot	Q94HW2	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1
TrEMBL	M1ANG9	Integrase catalytic domain-containing protein OS=Solanum tuberosum OX=4113 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Plumbaginaceae	Limonium bicolor	139	Lb0G36958, Lb0G37625, Lb0G37651, Lb0G37832, Lb1G00074 ... Lb1G01041, Lb1G01284, Lb1G01302, Lb1G01313, Lb1G01909, Lb1G02090, Lb1G02171, Lb1G02262, Lb1G02725, Lb1G03091, Lb1G03104, Lb1G03576, Lb1G03653, Lb1G03691, Lb1G03810, Lb1G04104, Lb1G04204, Lb1G04764, Lb1G04782, Lb1G04978, Lb1G05127, Lb1G05421, Lb1G06522, Lb1G06694, Lb1G06709, Lb1G06915, Lb1G07575, Lb1G07974, Lb2G08452, Lb2G08754, Lb2G08786, Lb2G09330, Lb2G09354, Lb2G09788, Lb2G09791, Lb2G09872, Lb2G10149, Lb2G10277, Lb2G10339, Lb2G10401, Lb2G10547, Lb2G10571, Lb2G10595, Lb2G10645, Lb2G10858, Lb2G11128, Lb2G11176, Lb2G11301, Lb2G11392, Lb2G11722, Lb2G11723, Lb2G11726, Lb2G11880, Lb2G11994, Lb2G12006, Lb2G12180, Lb2G13380, Lb2G13858, Lb2G14192, Lb2G14385, Lb2G14802, Lb2G14815, Lb2G15389, Lb3G15874, Lb3G15888, Lb3G16904, Lb3G17648, Lb3G18076, Lb3G18459, Lb3G18462, Lb3G18835, Lb3G19004, Lb3G19049, Lb3G19141, Lb3G19410, Lb3G19564, Lb3G19669, Lb3G19745, Lb3G19968, Lb3G20348, Lb3G20349, Lb3G20424, Lb3G20556, Lb3G20584, Lb3G20837, Lb3G20990, Lb3G20991, Lb3G21080, Lb4G21491, Lb4G21493, Lb4G21495, Lb4G22778, Lb4G23783, Lb4G23798, Lb4G23803, Lb4G24071, Lb4G24085, Lb4G24086, Lb4G24642, Lb4G24910, Lb4G24972, Lb4G25774, Lb4G25880, Lb5G26602, Lb5G26603, Lb5G26645, Lb5G27050, Lb5G27731, Lb5G27935, Lb5G27936, Lb5G28415, Lb5G29025, Lb5G29564, Lb6G30134, Lb6G30265, Lb6G30266, Lb6G30292, Lb6G30447, Lb6G30649, Lb6G31356, Lb6G31492, Lb6G31691, Lb6G31840, Lb6G32579, Lb7G33114, Lb7G33326, Lb7G33404, Lb7G34305, Lb7G35257, Lb7G35440, Lb7G35441, Lb8G36625, Lb8G36627, Lb8G36629