Basic Information
Locus ID:
Lb3G19562
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Acyl-CoA N-acyltransferase with RING FYVE PHD-type zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 235310490 | 235317901 | + | Lb3G19562 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 95,100.53 Da | 42.67 | 75.89 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 503 | 542 | 1.57169E-16 | - |
| CDD | cd15539 | PHD1_AIRE | 503 | 542 | 1.57169E-16 | - |
| Pfam | PF00628 | PHD-finger | 503 | 543 | 2.1E-8 | IPR019787 |
| Pfam | PF00628 | PHD-finger | 503 | 543 | 2.1E-8 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 436 | 485 | 3.8E-12 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 271 | 326 | 2.4E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 271 | 326 | 2.4E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 436 | 485 | 3.8E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 485 | 543 | 1.32E-15 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 584 | 646 | 6.17E-7 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 485 | 543 | 1.32E-15 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 731 | 834 | 4.6E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 584 | 646 | 6.17E-7 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 731 | 834 | 4.6E-5 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 587 | 649 | 3.5E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 587 | 649 | 3.5E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 487 | 567 | 1.6E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 487 | 567 | 1.6E-17 | IPR013083 |
| SMART | SM00249 | PHD_3 | 590 | 647 | 0.0014 | IPR001965 |
| SMART | SM00249 | PHD_3 | 502 | 543 | 2.0E-12 | IPR001965 |
| SMART | SM00249 | PHD_3 | 590 | 647 | 0.0014 | IPR001965 |
| SMART | SM00249 | PHD_3 | 502 | 543 | 2.0E-12 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 500 | 545 | 10.540199 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 500 | 545 | 10.540199 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 503 | 542 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 503 | 542 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 54 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 395 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_052186436.1 | uncharacterized protein LOC127797506 isoform X2 [Diospyros lotus] | 0 |
| Q56R14 | E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis OX=8355 GN=trim33 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A1WUJ7 | Chromodomain-helicase-DNA-binding protein 4 OS=Morella rubra OX=262757 GN=CJ030_MR1G020868 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology