halophFGD

Basic Information

Locus ID: Lb3G19560

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Zinc finger, C3HC4 type (RING finger)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr03	235238174	235244694	-	Lb3G19560

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.72	97,602.03 Da	60.56	69.38	-0.83

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16647	mRING-HC-C3HC5_NEU1	823	862	8.30174E-19	-
CDD	cd16647	mRING-HC-C3HC5_NEU1	823	862	8.30174E-19	-
Pfam	PF13920	Zinc finger, C3HC4 type (RING finger)	821	867	4.8E-11	-
Pfam	PF13920	Zinc finger, C3HC4 type (RING finger)	821	867	4.8E-11	-
SUPERFAMILY	SSF57850	RING/U-box	806	868	3.83E-8	-
SUPERFAMILY	SSF57850	RING/U-box	806	868	3.83E-8	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	812	873	1.4E-12	IPR013083
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	812	873	1.4E-12	IPR013083
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	823	862	10.704165	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	823	862	10.704165	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	356	377	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	417	475	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	503	551	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	71	85	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	683	708	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	513	536	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	42	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	17	42	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	443	465	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	537	551	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	102	136	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	61	136	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	417	475	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	513	536	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	102	136	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	537	551	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	61	136	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	42	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	683	708	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	71	85	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	356	377	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	443	465	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	17	42	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	503	551	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	418	442	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	418	442	-	-
Coils	Coil	Coil	245	265	-	-
Coils	Coil	Coil	245	265	-	-
Coils	Coil	Coil	751	771	-	-
Coils	Coil	Coil	751	771	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT2G27950.1	Ring/U-Box superfamily protein.
RefSeq	XP_021732900.1	uncharacterized protein LOC110699684 [Chenopodium quinoa]
Swiss-Prot	Q24746	Protein neuralized OS=Drosophila virilis OX=7244 GN=neur PE=4 SV=1
TrEMBL	A0A7C9F993	RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg14517, jg16511, jg2805, jg34378, jg35947, jg37569
Aizoaceae	Mesembryanthemum crystallinum	2	gene_21208, gene_9663
Amaranthaceae	Atriplex hortensis	4	Ah007353, Ah007788, Ah011681, Ah031405
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11971, Sbi_jg18110, Sbi_jg36458, Sbi_jg46904
Amaranthaceae	Salicornia europaea	2	Seu_jg21194, Seu_jg4471
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00009534, GOSA_00027648
Amaranthaceae	Suaeda glauca	6	Sgl20760, Sgl20764, Sgl21372, Sgl26148, Sgl80382, Sgl82842
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000008682, gene:ENSEOMG00000015230 ... gene:ENSEOMG00000028189, gene:ENSEOMG00000037409, gene:ENSEOMG00000041756, gene:ENSEOMG00000052277
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0015770, CQ.Regalona.r1.4BG0016260 ... CQ.Regalona.r1.9AG0009930, CQ.Regalona.r1.9BG0012480
Anacardiaceae	Pistacia vera	2	pistato.v30057560, pistato.v30170380
Apiaceae	Apium graveolens	4	Ag10G00643, Ag11G04564, Ag2G01013, Ag2G01014
Arecaceae	Cocos nucifera	4	COCNU_07G011290, COCNU_08G010470, COCNU_09G007960 ... COCNU_10G008380
Arecaceae	Phoenix dactylifera	3	gene-LOC103698680, gene-LOC103716994, gene-LOC103719555
Asparagaceae	Asparagus officinalis	3	AsparagusV1_07.2095.V1.1, AsparagusV1_07.2096.V1.1 ... AsparagusV1_10.1558.V1.1
Asteraceae	Flaveria trinervia	2	Ftri17G27602, Ftri8G33871
Brassicaceae	Arabidopsis thaliana	2	AT2G27950.1, AT5G04460.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10016236m.g.v1.0, Thhalv10020131m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g08780.v2.2, Sp4g10770.v2.2, Sp6g38290.v2.2
Brassicaceae	Brassica nigra	5	BniB01g054510.2N, BniB02g056050.2N, BniB02g056060.2N ... BniB06g016760.2N, BniB07g057630.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0530, Ceq05G1634
Casuarinaceae	Casuarina glauca	2	Cgl02G0551, Cgl05G1628
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g09520, gene.Cymno10g02710, gene.Cymno14g01200
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g19940, gene.Thate08g01740, gene.Thate08g22490
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-481
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1148, evm.TU.LG09.809
Plantaginaceae	Plantago ovata	3	Pov_00015907, Pov_00035050, Pov_00040254
Plumbaginaceae	Limonium bicolor	4	Lb1G05329, Lb3G19559, Lb3G19560, Lb3G20631
Poaceae	Echinochloa crus-galli	7	AH01.5020, AH07.3999, BH03.1292, BH07.3810, CH07.3868 ... Contig866.37, Contig866.38
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0151100, gene-QOZ80_2BG0206510 ... gene-QOZ80_3AG0230430, gene-QOZ80_3BG0297420, gene-QOZ80_6AG0525080, gene-QOZ80_6BG0478710
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0331660.1, HORVU.MOREX.r3.4HG0414400.1 ... HORVU.MOREX.r3.6HG0631660.1
Poaceae	Lolium multiflorum	5	gene-QYE76_006873, gene-QYE76_018201, gene-QYE76_026812 ... gene-QYE76_026864, gene-QYE76_071767
Poaceae	Oryza coarctata	6	Oco03G025790, Oco04G026280, Oco05G000420, Oco06G000410 ... Oco17G012320, Oco18G012240
Poaceae	Oryza sativa	3	LOC_Os02g57750.1, LOC_Os03g01720.1, LOC_Os09g39690.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G513200, gene-BS78_02G135100 ... gene-BS78_04G325100
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0100969, Pt_Chr0105824, Pt_Chr0604587, Pt_Chr0605649 ... Pt_Chr0700641
Poaceae	Sporobolus alterniflorus	8	Chr09G026680, Chr10G005430, Chr11G013770, Chr12G000330 ... Chr13G000440, Chr14G008280, Chr15G000360, Chr21G008450
Poaceae	Thinopyrum elongatum	2	Tel4E01G014000, Tel6E01G746700
Poaceae	Triticum dicoccoides	5	gene_TRIDC4AG047270, gene_TRIDC4BG001400 ... gene_TRIDC5AG075100, gene_TRIDC6AG059490, gene_TRIDC6BG070490
Poaceae	Triticum aestivum	8	TraesCS4A02G311200.1, TraesCS4B02G003100.1 ... TraesCS4D02G003000.2, TraesCS4D02G354300.1, TraesCS5A02G529500.1, TraesCS6A02G405400.1, TraesCS6B02G449800.2, TraesCS6D02G389100.1
Poaceae	Zea mays	3	Zm00001eb000600_P001, Zm00001eb190930_P002 ... Zm00001eb307770_P002
Poaceae	Zoysia japonica	3	nbis-gene-31799, nbis-gene-3200, nbis-gene-39764
Poaceae	Zoysia macrostachya	3	Zma_g17454, Zma_g2277, Zma_g32020
Portulacaceae	Portulaca oleracea	7	evm.TU.LG06.1040, evm.TU.LG07.1534, evm.TU.LG08.1488 ... evm.TU.LG11.481, evm.TU.LG15.1710, evm.TU.LG15.1711, evm.TU.LG22.380
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g13730, gene.Posoc06g05950
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_14_RagTag.833, evm.TU.Scaffold_4_RagTag.1566
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-16588, nbisL1-mrna-26175
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-19185, nbisL1-mrna-3183, nbisL1-mrna-5507
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-17157, nbisL1-mrna-21789, nbisL1-mrna-21790 ... nbisL1-mrna-4388
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.315, evm.TU.utg000008l.852 ... evm.TU.utg000025l.50
Rhizophoraceae	Kandelia obovata	3	Maker00000271, Maker00004061, Maker00012369
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-15898, nbisL1-mrna-16309, nbisL1-mrna-2200
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21424, nbisL1-mrna-23799, nbisL1-mrna-9601
Salicaceae	Populus euphratica	5	populus_peu06187, populus_peu08312, populus_peu20028 ... populus_peu20029, populus_peu35391
Solanaceae	Lycium barbarum	2	gene-LOC132600490, gene-LOC132612596
Solanaceae	Solanum chilense	3	SOLCI001834700, SOLCI001952400, SOLCI004828500
Solanaceae	Solanum pennellii	4	gene-LOC107004761, gene-LOC107004788, gene-LOC107012117 ... gene-LOC107022532
Tamaricaceae	Reaumuria soongarica	2	STRG.32408_chr09_+, gene_8592
Tamaricaceae	Tamarix chinensis	3	TC02G1057, TC03G1905, TC11G1621
Zosteraceae	Zostera marina	2	Zosma05g26370.v3.1, Zosma06g29220.v3.1