Basic Information
Locus ID:
Lb3G19523
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 233118612 | 233120256 | + | Lb3G19523 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 23,519.76 Da | 51.57 | 66.59 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 124 | 154 | 1.2E-5 | IPR011016 |
| Pfam | PF12906 | RING-variant domain | 124 | 154 | 1.2E-5 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 85 | 157 | 2.71E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 85 | 157 | 2.71E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 164 | 9.2E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 164 | 9.2E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 87 | 155 | 3.2E-8 | IPR011016 |
| SMART | SM00744 | ringv_2 | 87 | 155 | 3.2E-8 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 80 | 161 | 14.30307 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 80 | 161 | 14.30307 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_016180104.1 | uncharacterized protein LOC107622638 [Arachis ipaensis] | 0 |
| TrEMBL | A0A6A5NG61 | RING-CH-type domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00038646 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology