Basic Information
Locus ID:
Lb3G19368
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 215801348 | 215808165 | + | Lb3G19368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 83,767.99 Da | 50.12 | 77.78 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 56 | 210 | 3.57981E-29 | - |
| CDD | cd05402 | NT_PAP_TUTase | 56 | 210 | 3.57981E-29 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 82 | 165 | 9.4E-11 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 363 | 420 | 2.5E-11 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 423 | 493 | 1.4E-6 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 16 | 359 | 3.8E-110 | IPR007012 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 16 | 359 | 3.8E-110 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 423 | 493 | 1.4E-6 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 363 | 420 | 2.5E-11 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 82 | 165 | 9.4E-11 | IPR002934 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 16 | 209 | 3.27E-49 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 359 | 7.85E-65 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 362 | 488 | 4.51E-34 | IPR011068 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 362 | 488 | 4.51E-34 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 16 | 209 | 3.27E-49 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 359 | 7.85E-65 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 362 | 477 | 2.0E-25 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 16 | 358 | 9.7E-161 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 204 | 9.7E-161 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 362 | 477 | 2.0E-25 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 16 | 358 | 9.7E-161 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 204 | 9.7E-161 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 563 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 563 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021909130.1 | nuclear poly(A) polymerase 1 [Carica papaya] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9APK9 | polynucleotide adenylyltransferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology