Basic Information
Locus ID:
Lb3G19283
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 208695119 | 208698065 | + | Lb3G19283 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 29,051.61 Da | 66.35 | 68.82 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 38 | 90 | 1.58315E-24 | - |
| CDD | cd16745 | RING-HC_AtRMA_like | 38 | 90 | 1.58315E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 40 | 88 | 6.2E-9 | IPR018957 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 40 | 88 | 6.2E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 36 | 101 | 1.27E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 36 | 101 | 1.27E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 117 | 1.6E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 13 | 117 | 1.6E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 40 | 88 | 8.2E-10 | IPR001841 |
| SMART | SM00184 | ring_2 | 40 | 88 | 8.2E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 40 | 89 | 12.754832 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 40 | 89 | 12.754832 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 55 | 64 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 55 | 64 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_021717366.1 | E3 ubiquitin-protein ligase RMA1H1-like [Chenopodium quinoa] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9E1P9 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology