Basic Information
Locus ID:
Lb3G19275
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 208129426 | 208139389 | + | Lb3G19275 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 127,474.47 Da | 42.56 | 76.86 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 26 | 149 | 1.03875E-40 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 167 | 496 | 7.11894E-161 | - |
| CDD | cd00121 | MATH | 26 | 149 | 1.03875E-40 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 167 | 496 | 7.11894E-161 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 169 | 491 | 3.9E-47 | IPR001394 |
| Pfam | PF00917 | MATH domain | 31 | 150 | 6.6E-20 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 857 | 1067 | 8.6E-58 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 595 | 847 | 2.0E-78 | IPR024729 |
| Pfam | PF00917 | MATH domain | 31 | 150 | 6.6E-20 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 169 | 491 | 3.9E-47 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 857 | 1067 | 8.6E-58 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 595 | 847 | 2.0E-78 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 164 | 522 | 4.71E-98 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 164 | 522 | 4.71E-98 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 22 | 158 | 2.13E-41 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 22 | 158 | 2.13E-41 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 23 | 165 | 5.4E-52 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 166 | 495 | 9.0E-90 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 656 | 772 | 8.6E-45 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 773 | 870 | 4.2E-28 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 166 | 495 | 9.0E-90 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 656 | 772 | 8.6E-45 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 23 | 165 | 5.4E-52 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 773 | 870 | 4.2E-28 | - |
| SMART | SM00061 | math_3 | 26 | 130 | 5.3E-20 | IPR002083 |
| SMART | SM00061 | math_3 | 26 | 130 | 5.3E-20 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 24 | 149 | 38.238457 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 169 | 494 | 40.046047 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 169 | 494 | 40.046047 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 24 | 149 | 38.238457 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 409 | 426 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 170 | 185 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 409 | 426 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 170 | 185 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| Coils | Coil | Coil | 503 | 534 | - | - |
| Coils | Coil | Coil | 503 | 534 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_010685483.1 | ubiquitin C-terminal hydrolase 12 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5QHR4 | ubiquitinyl hydrolase 1 OS=Citrus unshiu OX=55188 GN=CUMW_231490 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology