Basic Information
Locus ID:
Lb3G19192
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 203095442 | 203097141 | - | Lb3G19192 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.62 | 21,886.11 Da | 32.43 | 91.58 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 41 | 112 | 4.2E-17 | IPR002130 |
| Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 154 | 195 | 2.6E-7 | IPR002130 |
| Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 154 | 195 | 2.6E-7 | IPR002130 |
| Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 41 | 112 | 4.2E-17 | IPR002130 |
| SUPERFAMILY | SSF50891 | Cyclophilin-like | 33 | 199 | 6.57E-48 | IPR029000 |
| SUPERFAMILY | SSF50891 | Cyclophilin-like | 33 | 199 | 6.57E-48 | IPR029000 |
| Gene3D | G3DSA:2.40.100.10 | - | 145 | 201 | 3.4E-12 | IPR029000 |
| Gene3D | G3DSA:2.40.100.10 | - | 24 | 139 | 1.7E-40 | IPR029000 |
| Gene3D | G3DSA:2.40.100.10 | - | 24 | 139 | 1.7E-40 | IPR029000 |
| Gene3D | G3DSA:2.40.100.10 | - | 145 | 201 | 3.4E-12 | IPR029000 |
| PIRSF | PIRSF001467 | Peptidylpro_ismrse | 23 | 135 | 3.3E-36 | IPR024936 |
| PIRSF | PIRSF001467 | Peptidylpro_ismrse | 147 | 201 | 1.2E-8 | IPR024936 |
| PIRSF | PIRSF001467 | Peptidylpro_ismrse | 23 | 135 | 3.3E-36 | IPR024936 |
| PIRSF | PIRSF001467 | Peptidylpro_ismrse | 147 | 201 | 1.2E-8 | IPR024936 |
| ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 40 | 198 | 29.183561 | IPR002130 |
| ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 40 | 198 | 29.183561 | IPR002130 |
| ProSitePatterns | PS00170 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 88 | 105 | - | IPR020892 |
| ProSitePatterns | PS00170 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 88 | 105 | - | IPR020892 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 93 | 105 | 4.0E-21 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 57 | 72 | 4.0E-21 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 159 | 174 | 4.0E-21 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 159 | 174 | 4.0E-21 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 93 | 105 | 4.0E-21 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 57 | 72 | 4.0E-21 | IPR002130 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58710.1 | rotamase CYP 7. Encodes cyclophilin ROC7. | 0 |
| RefSeq | XP_002298312.3 | peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus trichocarpa] | 0 |
| Q9SP02 | Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana OX=3702 GN=CYP20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N5LDT2 | Peptidyl-prolyl cis-trans isomerase OS=Salix brachista OX=2182728 GN=DKX38_013899 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology