Basic Information
Locus ID:
Lb3G19102
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 196584700 | 196596837 | + | Lb3G19102 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 51,749.86 Da | 37.90 | 67.54 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 79 | 179 | 2.59226E-9 | IPR044730 |
| CDD | cd06222 | RNase_H_like | 79 | 179 | 2.59226E-9 | IPR044730 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 217 | 307 | 1.1E-6 | - |
| Pfam | PF13456 | Reverse transcriptase-like | 66 | 181 | 1.3E-6 | IPR002156 |
| Pfam | PF13456 | Reverse transcriptase-like | 66 | 181 | 1.3E-6 | IPR002156 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 217 | 307 | 1.1E-6 | - |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 71 | 186 | 5.31E-7 | IPR012337 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 71 | 186 | 5.31E-7 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 60 | 183 | 5.2E-10 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 60 | 183 | 5.2E-10 | IPR036397 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 381 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_012840817.1 | PREDICTED: uncharacterized protein LOC105961120 [Erythranthe guttata] | 0 |
| TrEMBL | A0A833XBB2 | Retrotran_gag_3 domain-containing protein OS=Juglans regia OX=51240 GN=F2P56_019229 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology