Basic Information
Locus ID:
Lb3G18898
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 177605181 | 177611184 | - | Lb3G18898 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 70,598.90 Da | 34.41 | 87.63 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 124 | 6.53688E-44 | - |
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 124 | 6.53688E-44 | - |
| Pfam | PF00651 | BTB/POZ domain | 29 | 117 | 4.5E-5 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 213 | 470 | 9.7E-89 | IPR027356 |
| Pfam | PF03000 | NPH3 family | 213 | 470 | 9.7E-89 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 29 | 117 | 4.5E-5 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 23 | 115 | 8.63E-15 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 23 | 115 | 8.63E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 120 | 7.8E-11 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 120 | 7.8E-11 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 213 | 494 | 87.43367 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 10.219954 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 10.219954 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 213 | 494 | 87.43367 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 571 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_007042622.2 | PREDICTED: BTB/POZ domain-containing protein NPY2 isoform X1 [Theobroma cacao] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A061E848 | Phototropic-responsive NPH3 family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_007212 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology