Basic Information
Locus ID:
Lb3G18822
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 172026925 | 172028851 | + | Lb3G18822 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 35,390.11 Da | 55.25 | 67.79 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 176 | 237 | 1.2E-11 | IPR002867 |
| Pfam | PF13445 | RING-type zinc-finger | 106 | 152 | 2.9E-6 | IPR027370 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 176 | 237 | 1.2E-11 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 258 | 303 | 1.3E-9 | IPR002867 |
| Pfam | PF13445 | RING-type zinc-finger | 106 | 152 | 2.9E-6 | IPR027370 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 258 | 303 | 1.3E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 251 | 306 | 3.27E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 105 | 184 | 5.65E-21 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 181 | 242 | 4.94E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 251 | 306 | 3.27E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 181 | 242 | 4.94E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 105 | 184 | 5.65E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 186 | 3.8E-23 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 234 | 309 | 6.5E-17 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 234 | 309 | 6.5E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 186 | 3.8E-23 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 175 | 237 | 2.1E-14 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 252 | 305 | 0.014 | IPR002867 |
| SMART | SM00184 | ring_2 | 106 | 154 | 2.3E-4 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 175 | 237 | 2.1E-14 | IPR002867 |
| SMART | SM00184 | ring_2 | 106 | 154 | 2.3E-4 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 252 | 305 | 0.014 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 102 | 312 | 28.987789 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 106 | 152 | 9.922256 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 102 | 312 | 28.987789 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 106 | 152 | 9.922256 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 124 | 133 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 124 | 133 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 77 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009417807.1 | PREDICTED: E3 ubiquitin-protein ligase RNF144A [Musa acuminata subsp. malaccensis] | 0 |
| Q9P3U4 | E3 ubiquitin-protein ligase dbl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbl4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6P4ASR5 | E3 ubiquitin-protein ligase RNF144B-like OS=Ziziphus jujuba OX=326968 GN=LOC107434981 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology