Basic Information
Locus ID:
Lb3G18793
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
U4 U6.U5 tri-snRNP-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 170453741 | 170454736 | - | Lb3G18793 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 19,419.52 Da | 52.66 | 84.78 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 28 | 159 | 5.5E-20 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 28 | 159 | 5.5E-20 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2 | 161 | 2.16E-31 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2 | 161 | 2.16E-31 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1 | 163 | 1.7E-39 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1 | 163 | 1.7E-39 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 162 | 20.118626 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 162 | 20.118626 | IPR028889 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22350.1 | Ubiquitin C-terminal hydrolases superfamily protein. | 0 |
| RefSeq | XP_002272213.4 | PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2 [Vitis vinifera] | 0 |
| Q5R761 | Ubiquitin carboxyl-terminal hydrolase 39 OS=Pongo abelii OX=9601 GN=USP39 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2U372 | USP domain-containing protein OS=Ceratopteris richardii OX=49495 GN=KP509_08G005200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120108275 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18793 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0179 |