Basic Information
Locus ID:
Lb3G18653
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 164617987 | 164620470 | + | Lb3G18653 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.31 | 18,497.82 Da | 43.45 | 74.57 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 15 | 143 | 4.8E-18 | IPR001574 |
| Pfam | PF00161 | Ribosome inactivating protein | 15 | 143 | 4.8E-18 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 5 | 144 | 1.96E-21 | IPR036041 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 5 | 144 | 1.96E-21 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 155 | 2.1E-30 | IPR016138 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 155 | 2.1E-30 | IPR016138 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_028792480.1 | ribosome-inactivating protein charybdin-like [Prosopis alba] | 0 |
| TrEMBL | A0A8T2WU43 | DUF6598 domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_028712 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology