Basic Information
Locus ID:
Lb3G18527
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
HPR
Description:
Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 159295413 | 159298935 | - | Lb3G18527 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 40,672.33 Da | 48.76 | 80.17 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18322 | BTB_POZ_SKP1 | 7 | 148 | 1.12592E-42 | - |
| CDD | cd18322 | BTB_POZ_SKP1 | 7 | 148 | 1.12592E-42 | - |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 134 | 181 | 5.0E-30 | IPR016072 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 134 | 181 | 5.0E-30 | IPR016072 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 7 | 65 | 1.8E-26 | IPR016073 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 7 | 65 | 1.8E-26 | IPR016073 |
| SUPERFAMILY | SSF54695 | POZ domain | 7 | 68 | 9.03E-20 | IPR011333 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 125 | 181 | 1.15E-22 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 7 | 68 | 9.03E-20 | IPR011333 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 125 | 181 | 1.15E-22 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 3 | 184 | 9.2E-60 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 3 | 184 | 9.2E-60 | IPR011333 |
| SMART | SM00512 | skp1_3 | 5 | 133 | 8.6E-22 | IPR001232 |
| SMART | SM00512 | skp1_3 | 5 | 133 | 8.6E-22 | IPR001232 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00260 (Glycine, serine and threonine metabolism)
map00260 (Glycine, serine and threonine metabolism)
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75950.1 | S phase kinase-associated protein 1. SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif. | 0 |
| RefSeq | XP_038994777.1 | SKP1-like protein 1B [Hibiscus syriacus] | 0 |
| Q39255 | SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3B0X3 | SKP1-like protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110330pilonHSYRG00027 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||