Basic Information
Locus ID:
Lb3G18524
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
HPR
Description:
Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 159245501 | 159248518 | + | Lb3G18524 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 16,969.04 Da | 35.89 | 81.52 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01466 | Skp1 family, dimerisation domain | 102 | 149 | 3.2E-26 | IPR016072 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 102 | 149 | 3.2E-26 | IPR016072 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 94 | 149 | 1.24E-20 | IPR036296 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 94 | 149 | 1.24E-20 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 41 | 151 | 2.5E-27 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 41 | 151 | 2.5E-27 | IPR011333 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00260 (Glycine, serine and threonine metabolism)
map00260 (Glycine, serine and threonine metabolism)
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42190.1 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein. Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis. | 0 |
| RefSeq | XP_022025826.1 | SKP1-like protein 1B [Helianthus annuus] | 0 |
| Q9FHW7 | SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A0N7KSW2 | Os11g0456300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0456300 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18524 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132619695 |