Basic Information
Locus ID:
Lb3G18393
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
mitotic sister chromatid cohesion
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 154315964 | 154319892 | + | Lb3G18393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.36 | 16,328.90 Da | 25.94 | 76.99 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 28 | 69 | 1.88E-8 | - |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 28 | 69 | 1.88E-8 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 22 | 77 | 3.3E-10 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 22 | 77 | 3.3E-10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 107 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02070.2 | MUTS homolog 6. encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex. | 0 |
| RefSeq | XP_048323003.1 | sister chromatid cohesion protein PDS5 homolog A, partial [Ziziphus jujuba var. spinosa] | 0 |
| O04716 | DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana OX=3702 GN=MSH6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6P6G1U0 | uncharacterized protein LOC107408768 isoform X4 OS=Ziziphus jujuba OX=326968 GN=LOC107408768 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology