Basic Information
Locus ID:
Lb3G18068
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 140253845 | 140264861 | + | Lb3G18068 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 104,746.80 Da | 42.58 | 76.89 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 509 | 722 | 1.0E-50 | IPR011682 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 509 | 722 | 1.0E-50 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 804 | 911 | 4.4E-12 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 255 | 347 | 3.2E-21 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 2 | 250 | 5.8E-66 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 255 | 347 | 3.2E-21 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 2 | 250 | 5.8E-66 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 804 | 911 | 4.4E-12 | IPR041147 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 355 | 914 | 3.3E-147 | IPR011013 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 355 | 914 | 3.3E-147 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 2 | 251 | 1.04E-72 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 254 | 348 | 6.87E-28 | IPR028995 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 254 | 348 | 6.87E-28 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 2 | 251 | 1.04E-72 | IPR011330 |
| Gene3D | G3DSA:2.60.40.1180 | - | 367 | 478 | 1.9E-25 | IPR013780 |
| Gene3D | G3DSA:2.60.40.1360 | - | 791 | 914 | 1.2E-36 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 791 | 914 | 1.2E-36 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 367 | 478 | 1.9E-25 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 502 | 770 | 2.8E-101 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 1 | 218 | 1.5E-81 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 219 | 296 | 5.9E-30 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 297 | 354 | 7.4E-22 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 1 | 218 | 1.5E-81 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 219 | 296 | 5.9E-30 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 297 | 354 | 7.4E-22 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 502 | 770 | 2.8E-101 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 255 | 329 | 5.6E-22 | IPR015341 |
| SMART | SM00872 | Alpha_mann_mid_2 | 255 | 329 | 5.6E-22 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_050241743.1 | alpha-mannosidase isoform X2 [Quercus robur] | 0 |
| Q9FKW9 | Probable alpha-mannosidase At5g66150 OS=Arabidopsis thaliana OX=3702 GN=At5g66150 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2P5BXE8 | Alpha-mannosidase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_201800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology