Basic Information
Locus ID:
Lb3G18035
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 139132761 | 139136659 | + | Lb3G18035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 46,820.98 Da | 46.43 | 92.67 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 252 | 382 | 4.94507E-60 | - |
| CDD | cd18787 | SF2_C_DEAD | 252 | 382 | 4.94507E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 44 | 241 | 1.94483E-135 | - |
| CDD | cd17939 | DEADc_EIF4A | 44 | 241 | 1.94483E-135 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 265 | 373 | 1.3E-28 | IPR001650 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 265 | 373 | 1.3E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 64 | 225 | 2.0E-40 | IPR011545 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 64 | 225 | 2.0E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 108 | 393 | 1.05E-74 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 108 | 393 | 1.05E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 248 | 412 | 7.5E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 248 | 412 | 7.5E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 29 | 247 | 3.7E-68 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 29 | 247 | 3.7E-68 | IPR027417 |
| SMART | SM00487 | ultradead3 | 58 | 255 | 1.6E-57 | IPR014001 |
| SMART | SM00490 | helicmild6 | 292 | 373 | 5.8E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 58 | 255 | 1.6E-57 | IPR014001 |
| SMART | SM00490 | helicmild6 | 292 | 373 | 5.8E-31 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 39 | 67 | 10.560987 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 70 | 240 | 29.59763 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 70 | 240 | 29.59763 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 251 | 412 | 25.60149 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 251 | 412 | 25.60149 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 39 | 67 | 10.560987 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 186 | 194 | - | IPR000629 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 186 | 194 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_031102947.1 | eukaryotic initiation factor 4A-11 [Ipomoea triloba] | 0 |
| P41382 | Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P5WZN6 | eukaryotic initiation factor 4A-14 OS=Durio zibethinus OX=66656 GN=LOC111278994 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology