Basic Information
Locus ID:
Lb3G17953
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 134845645 | 134851491 | - | Lb3G17953 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 45,979.27 Da | 46.25 | 65.73 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 56 | 126 | 5.89477E-35 | - |
| CDD | cd12619 | RRM2_PUB1 | 140 | 214 | 3.53243E-48 | - |
| CDD | cd12354 | RRM3_TIA1_like | 260 | 335 | 6.38398E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 140 | 214 | 3.53243E-48 | - |
| CDD | cd12352 | RRM1_TIA1_like | 56 | 126 | 5.89477E-35 | - |
| CDD | cd12354 | RRM3_TIA1_like | 260 | 335 | 6.38398E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 122 | 9.4E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 262 | 328 | 2.7E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 211 | 6.5E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 122 | 9.4E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 262 | 328 | 2.7E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 211 | 6.5E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 251 | 347 | 3.53E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 51 | 219 | 9.51E-43 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 251 | 347 | 3.53E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 51 | 219 | 9.51E-43 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 231 | 339 | 8.2E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 134 | 230 | 7.1E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 134 | 230 | 7.1E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 231 | 339 | 8.2E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 133 | 1.6E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 133 | 1.6E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 140 | 213 | 6.6E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 261 | 331 | 7.7E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 140 | 213 | 6.6E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 55 | 124 | 3.3E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 261 | 331 | 7.7E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 55 | 124 | 3.3E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 260 | 335 | 14.299986 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 139 | 217 | 16.687742 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 128 | 15.425642 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 139 | 217 | 16.687742 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 128 | 15.425642 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 260 | 335 | 14.299986 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_027125672.1 | oligouridylate-binding protein 1B-like [Coffea arabica] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9DU33 | Oligouridylate binding protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology