Basic Information
Locus ID:
Lb3G17625
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 117398403 | 117407606 | + | Lb3G17625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 200,822.64 Da | 48.09 | 84.79 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1455 | 1865 | 1.57325E-119 | IPR000569 |
| CDD | cd00078 | HECTc | 1455 | 1865 | 1.57325E-119 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1502 | 1870 | 4.7E-80 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1502 | 1870 | 4.7E-80 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1448 | 1863 | 1.2E-92 | IPR035983 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1448 | 1863 | 1.2E-92 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 187 | 654 | 1.65E-40 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 187 | 654 | 1.65E-40 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1743 | 1868 | 6.7E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 177 | 495 | 4.7E-51 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1743 | 1868 | 6.7E-32 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1395 | 1633 | 7.3E-45 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 177 | 495 | 4.7E-51 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1395 | 1633 | 7.3E-45 | - |
| SMART | SM00119 | hect_3 | 1466 | 1870 | 1.2E-80 | IPR000569 |
| SMART | SM00119 | hect_3 | 1466 | 1870 | 1.2E-80 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1479 | 1870 | 56.304348 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1479 | 1870 | 56.304348 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 967 | 1089 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 983 | 1015 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1132 | 1163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 967 | 1089 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 983 | 1015 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1270 | 1291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1132 | 1163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1138 | 1162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1138 | 1162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1270 | 1291 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_010690374.2 | E3 ubiquitin-protein ligase UPL3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T1QGT3 | HECT domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_05G081300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology