Basic Information
Locus ID:
Lb3G17604
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 116253685 | 116260941 | - | Lb3G17604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 80,030.60 Da | 55.76 | 72.48 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 124 | 429 | 3.30017E-159 | - |
| CDD | cd02661 | Peptidase_C19E | 124 | 429 | 3.30017E-159 | - |
| Pfam | PF01753 | MYND finger | 29 | 66 | 8.4E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 125 | 428 | 1.1E-45 | IPR001394 |
| Pfam | PF01753 | MYND finger | 29 | 66 | 8.4E-10 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 125 | 428 | 1.1E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 123 | 431 | 4.32E-88 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 26 | 69 | 1.03E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 123 | 431 | 4.32E-88 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 26 | 69 | 1.03E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 17 | 71 | 9.2E-14 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 121 | 438 | 3.0E-91 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 121 | 438 | 3.0E-91 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 17 | 71 | 9.2E-14 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 29 | 66 | 12.14712 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 125 | 431 | 49.48761 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 125 | 431 | 49.48761 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 29 | 66 | 12.14712 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 126 | 141 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 29 | 66 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 126 | 141 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 29 | 66 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 571 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_021762112.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Chenopodium quinoa] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9A2N9 | Ubiquitinyl hydrolase 1 (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology