Basic Information
Locus ID:
Lb3G17603
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 116184874 | 116191239 | - | Lb3G17603 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 94,356.36 Da | 48.06 | 75.40 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 174 | 204 | 2.7E-6 | IPR001394 |
| Pfam | PF01753 | MYND finger | 78 | 115 | 1.0E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 213 | 453 | 8.9E-29 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 213 | 453 | 8.9E-29 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 174 | 204 | 2.7E-6 | IPR001394 |
| Pfam | PF01753 | MYND finger | 78 | 115 | 1.0E-9 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 171 | 455 | 1.82E-73 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 171 | 455 | 1.82E-73 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 75 | 118 | 1.26E-10 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 75 | 118 | 1.26E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 167 | 210 | 2.3E-9 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 66 | 120 | 1.1E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 167 | 210 | 2.3E-9 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 66 | 120 | 1.1E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 211 | 456 | 3.9E-61 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 211 | 456 | 3.9E-61 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 78 | 115 | 12.14712 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 174 | 456 | 38.114819 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 78 | 115 | 12.14712 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 174 | 456 | 38.114819 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 78 | 115 | - | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 78 | 115 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 175 | 190 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 175 | 190 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 577 | 596 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_021864530.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Spinacia oleracea] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9R6D3 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Spinacia oleracea OX=3562 GN=SOVF_107080 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology