Basic Information
Locus ID:
Lb3G17364
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 104988956 | 104992766 | - | Lb3G17364 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 35,416.80 Da | 57.66 | 64.07 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 12 | 183 | 1.4E-79 | IPR004854 |
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 12 | 183 | 1.4E-79 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 108 | 181 | 1.7E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 5 | 106 | 3.0E-43 | IPR042299 |
| Gene3D | G3DSA:2.40.40.50 | - | 5 | 106 | 3.0E-43 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 108 | 181 | 1.7E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 307 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_006379263.1 | uncharacterized protein LOC7494294 isoform X2 [Populus trichocarpa] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | B9HRF2 | Ubiquitin fusion degradation protein 1 homolog OS=Populus trichocarpa OX=3694 GN=POPTR_009G124900 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology