Basic Information
Locus ID:
Lb3G17349
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Transposase family tnp2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 104097046 | 104104848 | - | Lb3G17349 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 110,468.44 Da | 34.76 | 77.42 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 856 | 963 | 1.23081E-13 | IPR044730 |
| CDD | cd06222 | RNase_H_like | 856 | 963 | 1.23081E-13 | IPR044730 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 313 | 387 | 1.7E-19 | IPR025312 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 693 | 784 | 4.9E-7 | IPR026960 |
| Pfam | PF02992 | Transposase family tnp2 | 1 | 85 | 3.8E-40 | IPR004242 |
| Pfam | PF13456 | Reverse transcriptase-like | 857 | 963 | 2.2E-11 | IPR002156 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 693 | 784 | 4.9E-7 | IPR026960 |
| Pfam | PF03004 | Plant transposase (Ptta/En/Spm family) | 515 | 565 | 1.0E-8 | IPR004252 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 313 | 387 | 1.7E-19 | IPR025312 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 81 | 115 | 4.1E-13 | IPR025452 |
| Pfam | PF13456 | Reverse transcriptase-like | 857 | 963 | 2.2E-11 | IPR002156 |
| Pfam | PF02992 | Transposase family tnp2 | 1 | 85 | 3.8E-40 | IPR004242 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 81 | 115 | 4.1E-13 | IPR025452 |
| Pfam | PF03004 | Plant transposase (Ptta/En/Spm family) | 515 | 565 | 1.0E-8 | IPR004252 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 850 | 963 | 7.71E-6 | IPR012337 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 850 | 963 | 7.71E-6 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 849 | 963 | 3.0E-6 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 849 | 963 | 3.0E-6 | IPR036397 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G40087.1 | Plant transposase (Ptta/En/Spm family). | 0 |
| RefSeq | XP_028223018.1 | uncharacterized protein LOC114404108 [Glycine soja] | 0 |
| TrEMBL | A0A1S3EGQ4 | uncharacterized protein LOC105852820 OS=Cicer arietinum OX=3827 GN=LOC105852820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||