Basic Information
Locus ID:
Lb3G17343
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 103975922 | 103978563 | - | Lb3G17343 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 28,903.51 Da | 46.31 | 66.86 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 140 | 188 | 1.8E-9 | IPR019787 |
| Pfam | PF01426 | BAH domain | 20 | 135 | 1.3E-18 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 140 | 188 | 1.8E-9 | IPR019787 |
| Pfam | PF01426 | BAH domain | 20 | 135 | 1.3E-18 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 131 | 190 | 7.82E-19 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 131 | 190 | 7.82E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 199 | 3.3E-19 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 3 | 134 | 3.7E-27 | IPR043151 |
| Gene3D | G3DSA:2.30.30.490 | - | 3 | 134 | 3.7E-27 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 199 | 3.3E-19 | IPR013083 |
| SMART | SM00249 | PHD_3 | 140 | 187 | 1.8E-8 | IPR001965 |
| SMART | SM00439 | BAH_4 | 20 | 136 | 3.5E-37 | IPR001025 |
| SMART | SM00439 | BAH_4 | 20 | 136 | 3.5E-37 | IPR001025 |
| SMART | SM00249 | PHD_3 | 140 | 187 | 1.8E-8 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 138 | 189 | 9.045 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 20 | 136 | 21.644266 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 138 | 189 | 9.045 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 20 | 136 | 21.644266 | IPR001025 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 141 | 186 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 141 | 186 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39100.1 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. Putative transcription factor containing a PHD finger and BAH motif, required for normal development | 0 |
| RefSeq | XP_004230951.1 | chromatin remodeling protein EBS [Solanum lycopersicum] | 0 |
| Q9FEN9 | Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CDS5 | Chromatin remodeling protein SHL-like OS=Solanum chilense OX=4083 GN=EJD97_025150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology