Basic Information
Locus ID:
Lb3G17306
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 102380695 | 102385727 | + | Lb3G17306 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 104,970.34 Da | 39.37 | 86.03 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 262 | 6.76795E-46 | - |
| CDD | cd00200 | WD40 | 9 | 262 | 6.76795E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 4.8E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 390 | 465 | 3.9E-12 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 7.5E-8 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 542 | 813 | 1.4E-76 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 1.4E-7 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 542 | 813 | 1.4E-76 | IPR010714 |
| Pfam | PF04053 | Coatomer WD associated region | 231 | 386 | 9.5E-17 | IPR006692 |
| Pfam | PF04053 | Coatomer WD associated region | 390 | 465 | 3.9E-12 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 4.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 7.5E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 1.4E-7 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 231 | 386 | 9.5E-17 | IPR006692 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 246 | 6.05E-52 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 246 | 6.05E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 250 | 1.2E-85 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 250 | 1.2E-85 | IPR015943 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 4.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 5.1E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 210 | 248 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 9.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 4.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 5.1E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 210 | 248 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 9.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 34.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 79 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 164 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 79 | 10.363778 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 164 | 12.631039 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 164 | 12.631039 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 164 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 13.716598 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 66 | 80 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 66 | 80 | 1.6E-5 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_012067197.1 | coatomer subunit alpha-1 [Jatropha curcas] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067L3H5 | Coatomer subunit alpha OS=Jatropha curcas OX=180498 GN=JCGZ_26756 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology