Basic Information
Locus ID:
Lb3G16846
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
1-phosphatidylinositol-3-phosphate 5-kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 79341551 | 79353408 | - | Lb3G16846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 179,023.47 Da | 43.55 | 75.58 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17300 | PIPKc_PIKfyve | 1307 | 1570 | 1.2158E-150 | IPR044769 |
| CDD | cd17300 | PIPKc_PIKfyve | 1307 | 1570 | 1.2158E-150 | IPR044769 |
| Pfam | PF01363 | FYVE zinc finger | 31 | 101 | 1.5E-18 | IPR000306 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1513 | 1568 | 1.0E-7 | IPR002498 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 390 | 518 | 2.8E-10 | IPR002423 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 390 | 518 | 2.8E-10 | IPR002423 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1346 | 1512 | 1.7E-34 | IPR002498 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1346 | 1512 | 1.7E-34 | IPR002498 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1513 | 1568 | 1.0E-7 | IPR002498 |
| Pfam | PF01363 | FYVE zinc finger | 31 | 101 | 1.5E-18 | IPR000306 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 29 | 101 | 7.67E-20 | IPR011011 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 435 | 552 | 2.51E-19 | IPR027409 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1305 | 1570 | 1.81E-81 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 29 | 101 | 7.67E-20 | IPR011011 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 435 | 552 | 2.51E-19 | IPR027409 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1305 | 1570 | 1.81E-81 | - |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 433 | 522 | 5.0E-21 | IPR027409 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 106 | 1.6E-21 | IPR013083 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 433 | 522 | 5.0E-21 | IPR027409 |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1289 | 1427 | 2.4E-36 | IPR027484 |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1289 | 1427 | 2.4E-36 | IPR027484 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 106 | 1.6E-21 | IPR013083 |
| Gene3D | G3DSA:3.30.810.10 | - | 1428 | 1571 | 8.2E-43 | - |
| Gene3D | G3DSA:3.30.810.10 | - | 1428 | 1571 | 8.2E-43 | - |
| SMART | SM00330 | PIPK_2 | 1281 | 1571 | 5.1E-130 | IPR002498 |
| SMART | SM00064 | fyve_4 | 26 | 102 | 1.5E-20 | IPR000306 |
| SMART | SM00064 | fyve_4 | 26 | 102 | 1.5E-20 | IPR000306 |
| SMART | SM00330 | PIPK_2 | 1281 | 1571 | 5.1E-130 | IPR002498 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1244 | 1570 | 58.433643 | IPR002498 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1244 | 1570 | 58.433643 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 34 | 101 | 13.307721 | IPR017455 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 34 | 101 | 13.307721 | IPR017455 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1067 | 1127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1067 | 1127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1117 | - | - |
| Coils | Coil | Coil | 1001 | 1028 | - | - |
| Coils | Coil | Coil | 1001 | 1028 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_010273819.1 | PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Nelumbo nucifera] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8B3F2 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Nelumbo nucifera OX=4432 GN=LOC104609260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology