Basic Information
Locus ID:
Lb3G16803
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 77205851 | 77211814 | - | Lb3G16803 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 45,332.29 Da | 50.93 | 69.78 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 134 | 208 | 2.39801E-51 | - |
| CDD | cd12352 | RRM1_TIA1_like | 50 | 120 | 3.01061E-36 | - |
| CDD | cd12354 | RRM3_TIA1_like | 254 | 328 | 1.99771E-34 | - |
| CDD | cd12354 | RRM3_TIA1_like | 254 | 328 | 1.99771E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 134 | 208 | 2.39801E-51 | - |
| CDD | cd12352 | RRM1_TIA1_like | 50 | 120 | 3.01061E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 50 | 116 | 3.8E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 135 | 205 | 2.9E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 256 | 322 | 1.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 50 | 116 | 3.8E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 256 | 322 | 1.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 135 | 205 | 2.9E-19 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 126 | 8.06E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 125 | 216 | 5.64E-28 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 125 | 216 | 5.64E-28 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 244 | 342 | 1.63E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 126 | 8.06E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 244 | 342 | 1.63E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 126 | 227 | 1.5E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 232 | 333 | 1.7E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 42 | 125 | 4.1E-19 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 126 | 227 | 1.5E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 42 | 125 | 4.1E-19 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 232 | 333 | 1.7E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 255 | 324 | 5.9E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 134 | 207 | 8.8E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 49 | 118 | 1.2E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 49 | 118 | 1.2E-15 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 134 | 207 | 0.0054 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 255 | 324 | 5.9E-18 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 255 | 324 | 14.0 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 255 | 324 | 14.0 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 134 | 207 | 8.8E-24 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 134 | 207 | 0.0054 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 48 | 122 | 14.91398 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 48 | 122 | 14.91398 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 254 | 328 | 14.641094 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 133 | 211 | 17.523457 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 133 | 211 | 17.523457 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 254 | 328 | 14.641094 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_028121973.1 | oligouridylate-binding protein 1 isoform X1 [Camellia sinensis] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A059CUR8 | Oligouridylate-binding protein 1-like OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C03299 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology