Basic Information
Locus ID:
Lb3G16589
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 69060494 | 69067430 | + | Lb3G16589 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 55,571.62 Da | 53.59 | 65.20 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 342 | 367 | 3.9E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 416 | 444 | 5.9E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 342 | 367 | 3.9E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 302 | 325 | 6.9E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 302 | 325 | 6.9E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 416 | 444 | 5.9E-8 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 294 | 330 | 1.26E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 372 | 405 | 2.38E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 294 | 330 | 1.26E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 413 | 445 | 1.24E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 337 | 365 | 3.92E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 337 | 365 | 3.92E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 372 | 405 | 2.38E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 413 | 445 | 1.24E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 336 | 369 | 4.6E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 410 | 446 | 1.6E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 447 | 479 | 1.4E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 370 | 407 | 4.1E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 292 | 331 | 4.7E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 292 | 331 | 4.7E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 447 | 479 | 1.4E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 336 | 369 | 4.6E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 370 | 407 | 4.1E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 410 | 446 | 1.6E-12 | - |
| SMART | SM00547 | zf_4 | 341 | 365 | 1.1E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 304 | 328 | 8.0E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 380 | 404 | 5.3E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 418 | 442 | 1.2E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 341 | 365 | 1.1E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 304 | 328 | 8.0E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 451 | 475 | 0.0018 | IPR001876 |
| SMART | SM00547 | zf_4 | 380 | 404 | 5.3E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 451 | 475 | 0.0018 | IPR001876 |
| SMART | SM00547 | zf_4 | 418 | 442 | 1.2E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 449 | 478 | 9.077439 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 302 | 331 | 9.74368 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 302 | 331 | 9.74368 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 339 | 368 | 8.953225 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 449 | 478 | 9.077439 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 416 | 445 | 10.534134 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 378 | 407 | 9.212946 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 378 | 407 | 9.212946 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 416 | 445 | 10.534134 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 339 | 368 | 8.953225 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 420 | 439 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 453 | 472 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 306 | 325 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 306 | 325 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 453 | 472 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 420 | 439 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_050256884.1 | zinc finger protein VAR3, chloroplastic isoform X2 [Quercus robur] | 0 |
| TrEMBL | A0A5J5BJ73 | Zinc finger protein VAR3, chloroplastic OS=Nyssa sinensis OX=561372 GN=F0562_023981 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology