Basic Information
Locus ID:
Lb3G16493
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 63730662 | 63735880 | + | Lb3G16493 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 43,737.14 Da | 60.84 | 84.65 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 272 | 376 | 4.8E-17 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 12 | 105 | 5.2E-13 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 272 | 376 | 4.8E-17 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 12 | 105 | 5.2E-13 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 271 | 374 | 2.88E-19 | - |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 22 | 122 | 5.23E-5 | - |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 271 | 374 | 2.88E-19 | - |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 22 | 122 | 5.23E-5 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 8 | 119 | 1.1E-29 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 263 | 383 | 1.3E-49 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 263 | 383 | 1.3E-49 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 8 | 119 | 1.1E-29 | - |
| SMART | SM00232 | pad1_6 | 272 | 385 | 5.6E-5 | IPR000555 |
| SMART | SM00232 | pad1_6 | 272 | 385 | 5.6E-5 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 273 | 385 | 28.595737 | IPR037518 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 273 | 385 | 28.595737 | IPR037518 |
| Coils | Coil | Coil | 77 | 111 | - | - |
| Coils | Coil | Coil | 77 | 111 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_021727742.1 | AMSH-like ubiquitin thioesterase 1 [Chenopodium quinoa] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RBA7 | MPN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_086080 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology