Basic Information
Locus ID:
Lb3G16396
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
presynapse organization
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 57122573 | 57140337 | + | Lb3G16396 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 129,930.82 Da | 50.69 | 78.45 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 880 | 940 | 0.00339383 | - |
| CDD | cd15532 | PHD2_CHD_II | 687 | 727 | 6.42162E-19 | - |
| CDD | cd15532 | PHD2_CHD_II | 687 | 727 | 6.42162E-19 | - |
| CDD | cd04301 | NAT_SF | 880 | 940 | 0.00339383 | - |
| Pfam | PF00628 | PHD-finger | 688 | 729 | 8.4E-8 | IPR019787 |
| Pfam | PF00628 | PHD-finger | 688 | 729 | 8.4E-8 | IPR019787 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 839 | 962 | 1.54E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 669 | 729 | 3.1E-13 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 669 | 729 | 3.1E-13 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 839 | 962 | 1.54E-8 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 677 | 749 | 8.5E-18 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 828 | 973 | 3.4E-6 | - |
| Gene3D | G3DSA:3.40.630.30 | - | 828 | 973 | 3.4E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 677 | 749 | 8.5E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 687 | 728 | 2.3E-13 | IPR001965 |
| SMART | SM00249 | PHD_3 | 687 | 728 | 2.3E-13 | IPR001965 |
| SMART | SM00249 | PHD_3 | 731 | 783 | 21.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 731 | 783 | 21.0 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 836 | 986 | 10.248369 | IPR000182 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 836 | 986 | 10.248369 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 685 | 730 | 10.0774 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 685 | 730 | 10.0774 | IPR019787 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1019 | 1055 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1019 | 1055 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1018 | 1055 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1018 | 1055 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 532 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14980.3 | - | 0 |
| RefSeq | XP_021848861.1 | uncharacterized protein LOC110788530 [Spinacia oleracea] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R300 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_119160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology