Basic Information
Locus ID:
Lb3G16229
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Heat Stress Transcription Factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 50045081 | 50046011 | + | Lb3G16229 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 32,270.15 Da | 53.24 | 73.75 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00447 | HSF-type DNA-binding | 48 | 137 | 8.8E-32 | IPR000232 |
| Pfam | PF00447 | HSF-type DNA-binding | 48 | 137 | 8.8E-32 | IPR000232 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 44 | 137 | 8.16E-33 | IPR036390 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 44 | 137 | 8.16E-33 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 29 | 138 | 5.8E-37 | IPR036388 |
| Gene3D | G3DSA:1.10.10.10 | - | 29 | 138 | 5.8E-37 | IPR036388 |
| SMART | SM00415 | hsfneu3 | 44 | 137 | 9.6E-56 | IPR000232 |
| SMART | SM00415 | hsfneu3 | 44 | 137 | 9.6E-56 | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 87 | 111 | - | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 87 | 111 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 48 | 71 | 3.6E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 86 | 98 | 3.6E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 99 | 111 | 3.6E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 99 | 111 | 3.6E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 86 | 98 | 3.6E-19 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 48 | 71 | 3.6E-19 | IPR000232 |
| Coils | Coil | Coil | 206 | 226 | - | - |
| Coils | Coil | Coil | 206 | 226 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41690.1 | heat shock transcription factor B3. member of Heat Stress Transcription Factor (Hsf) family | 0 |
| RefSeq | XP_021826380.1 | heat stress transcription factor B-3 [Prunus avium] | 0 |
| O22230 | Heat stress transcription factor B-3 OS=Arabidopsis thaliana OX=3702 GN=HSFB3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5TH49 | heat stress transcription factor B-3 OS=Prunus avium OX=42229 GN=LOC110767210 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology