Basic Information
Locus ID:
Lb3G16161
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
proteinaceous RNase P
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 46394081 | 46397738 | + | Lb3G16161 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 58,541.98 Da | 43.15 | 78.00 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18718 | PIN_PRORP | 335 | 459 | 1.39614E-50 | - |
| CDD | cd18718 | PIN_PRORP | 335 | 459 | 1.39614E-50 | - |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 26 | 236 | 2.0E-76 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 277 | 505 | 5.4E-63 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 26 | 236 | 2.0E-76 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 277 | 505 | 5.4E-63 | IPR031595 |
| Gene3D | G3DSA:3.40.50.11980 | - | 295 | 471 | 2.9E-209 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 34 | 506 | 2.9E-209 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 34 | 506 | 2.9E-209 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 295 | 471 | 2.9E-209 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 149 | 183 | 8.856788 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 149 | 183 | 8.856788 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16650.1 | proteinaceous RNase P 2. | 0 |
| RefSeq | XP_021845485.1 | proteinaceous RNase P 2-like [Spinacia oleracea] | 0 |
| Q680B9 | Proteinaceous RNase P 2 OS=Arabidopsis thaliana OX=3702 GN=PRORP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LD46 | ribonuclease P OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology