Basic Information
Locus ID:
Lb3G16041
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 38355766 | 38358521 | - | Lb3G16041 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 49,073.22 Da | 45.00 | 78.74 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14136 | STKc_SRPK | 26 | 410 | 1.84269E-168 | - |
| CDD | cd14136 | STKc_SRPK | 26 | 410 | 1.84269E-168 | - |
| Pfam | PF00069 | Protein kinase domain | 258 | 410 | 1.2E-19 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 38 | 177 | 7.4E-22 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 258 | 410 | 1.2E-19 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 38 | 177 | 7.4E-22 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 33 | 416 | 4.82E-78 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 33 | 416 | 4.82E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 91 | 410 | 8.4E-113 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 91 | 410 | 8.4E-113 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 23 | 122 | 8.4E-113 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 23 | 122 | 8.4E-113 | - |
| SMART | SM00220 | serkin_6 | 37 | 410 | 8.3E-61 | IPR000719 |
| SMART | SM00220 | serkin_6 | 37 | 410 | 8.3E-61 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 37 | 410 | 33.417736 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 37 | 410 | 33.417736 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 164 | 176 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 43 | 66 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 43 | 66 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 164 | 176 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17530.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021851492.1 | SRSF protein kinase 1-like [Spinacia oleracea] | 0 |
| Q45FA5 | Serine/threonine-protein kinase SRPK OS=Physarum polycephalum OX=5791 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RKT6 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_055320 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology