Basic Information
Locus ID:
Lb3G15885
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 26201226 | 26213590 | + | Lb3G15885 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 33,415.56 Da | 62.60 | 53.54 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 114 | 163 | 1.2E-11 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 180 | 227 | 1.9E-10 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 114 | 163 | 1.2E-11 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 180 | 227 | 1.9E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 114 | 170 | 3.81E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 230 | 1.47E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 230 | 1.47E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 114 | 170 | 3.81E-10 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 159 | 286 | 3.4E-47 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 159 | 286 | 3.4E-47 | - |
| SMART | SM00647 | ibrneu5 | 167 | 237 | 0.035 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 167 | 237 | 0.035 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 103 | 163 | 3.1E-13 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 103 | 163 | 3.1E-13 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 1 | 241 | 32.715752 | IPR044066 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 1 | 241 | 32.715752 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 44 | - | - |
| Coils | Coil | Coil | 249 | 269 | - | - |
| Coils | Coil | Coil | 249 | 269 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_034691586.1 | probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Vitis riparia] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KMM1 | RBR-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology