Basic Information
Locus ID:
Lb3G15846
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 23595751 | 23598642 | - | Lb3G15846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 36,103.97 Da | 30.95 | 75.30 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 15 | 323 | 8.00551E-98 | - |
| CDD | cd00200 | WD40 | 15 | 323 | 8.00551E-98 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 205 | 251 | 7.9E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 112 | 150 | 1.1E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 154 | 192 | 7.0E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 112 | 150 | 1.1E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 323 | 5.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 75 | 108 | 6.7E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 15 | 51 | 2.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 323 | 5.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 154 | 192 | 7.0E-9 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 205 | 251 | 7.9E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 15 | 51 | 2.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 75 | 108 | 6.7E-10 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 10 | 323 | 3.85E-97 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 10 | 323 | 3.85E-97 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 327 | 8.0E-132 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 327 | 8.0E-132 | IPR015943 |
| SMART | SM00320 | WD40_4 | 195 | 235 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 280 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 195 | 235 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 280 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 153 | 192 | 9.4E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 12 | 51 | 4.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 69 | 108 | 4.1E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 153 | 192 | 9.4E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 111 | 150 | 3.7E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 111 | 150 | 3.7E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 12 | 51 | 4.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 324 | 3.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 324 | 3.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 69 | 108 | 4.1E-11 | IPR001680 |
| PIRSF | PIRSF002394 | GNBP_B | 3 | 326 | 2.0E-77 | - |
| PIRSF | PIRSF002394 | GNBP_B | 3 | 326 | 2.0E-77 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 118 | 155 | 14.687391 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 289 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 19 | 60 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 118 | 159 | 19.063511 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 76 | 117 | 18.996674 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 76 | 113 | 14.265575 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 160 | 196 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 118 | 159 | 19.063511 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 76 | 117 | 18.996674 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 19 | 54 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 289 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 19 | 60 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 160 | 201 | 15.554599 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 203 | 240 | 10.521959 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 19 | 54 | 11.523771 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 118 | 155 | 14.687391 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 76 | 113 | 14.265575 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 160 | 201 | 15.554599 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 203 | 244 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 160 | 196 | 11.919224 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 203 | 240 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 203 | 244 | 13.950525 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 179 | 193 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 95 | 109 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 137 | 151 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 179 | 193 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 267 | 281 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 137 | 151 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 267 | 281 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 95 | 109 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 137 | 151 | 2.6E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 267 | 281 | 2.6E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 95 | 109 | 2.6E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 267 | 281 | 2.6E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 95 | 109 | 2.6E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 137 | 151 | 2.6E-9 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49660.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_014507364.1 | COMPASS-like H3K4 histone methylase component WDR5A [Vigna radiata var. radiata] | 0 |
| Q93847 | WD repeat-containing protein wdr-5.2 OS=Caenorhabditis elegans OX=6239 GN=wdr-5.2 PE=4 SV=1 | 0 | |
| TrEMBL | A0A1S3UN45 | COMPASS-like H3K4 histone methylase component WDR5A OS=Vigna radiata var. radiata OX=3916 GN=LOC106767058 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35306, jg39882 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10152, gene_13572 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037249 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g074580, BVRB_5g119310 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17396, Sbi_jg30720, Sbi_jg58546, Sbi_jg62046 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg28415, Seu_jg660 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004978 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24276, Sgl29451, Sgl55025, Sgl80526 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009682, gene:ENSEOMG00000029317 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0002860, CQ.Regalona.r1.4BG0003010 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30056180, pistato.v30204350 |
| Apiaceae | Apium graveolens | 2 | Ag10G00729, Ag4G01185 |
| Arecaceae | Cocos nucifera | 6 | COCNU_05G000970, COCNU_06G014350, COCNU_06G019260 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103704252, gene-LOC103705709, gene-LOC103707622 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.719.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G26086, Ftri17G18327 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G49660.1, AT4G02730.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10010551m.g.v1.0, Thhalv10022457m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g12420.v2.2, Sp6g02690.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g055250.2N, BniB08g045430.2N, BniB08g063320.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0430 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g01100, gene.Cymno06g11640 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0127s00025.v1.0, Dusal.2856s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g09460, gene.Thate09g06630 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG03.1454, evm.TU.LG04.1083, evm.TU.LG10.567 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00008045, Pov_00024139, Pov_00033976 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G15846, Lb4G23840, Lb4G23844 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.761, AH02.2714, AH03.3413, BH01.903, BH03.3631 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3BG0263400, gene-QOZ80_7AG0573580 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0135250.1, HORVU.MOREX.r3.4HG0338790.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040191, gene-QYE76_040541 |
| Poaceae | Oryza coarctata | 3 | Oco05G022250, Oco06G023140, Oco14G011270 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g51550.2, LOC_Os07g38430.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G097800, gene-BS78_02G322200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304498, Pt_Chr0304575 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G006520, Chr04G027630, Chr07G026550, Chr12G030960 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G377000, Tel4E01G096100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG025340, gene_TRIDC2BG029800 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G196900.1, TraesCS2B02G224500.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb055840_P001, Zm00001eb270960_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-14920, nbis-gene-15990, nbis-gene-29410 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g2906, Zma_g585, Zma_g6694 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG14.1612 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g21290, gene.Posoc03g05020, gene.Posoc03g26900 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_2_RagTag.305, evm.TU.Scaffold_6_RagTag.1740 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17420, nbisL1-mrna-4886 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11893, nbisL1-mrna-19088 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12028, nbisL1-mrna-9833 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.771, evm.TU.utg000011l.1059 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005699, Maker00008120 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15415, nbisL1-mrna-2488 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3346, nbisL1-mrna-6081 |
| Salicaceae | Populus euphratica | 5 | populus_peu05212, populus_peu09234, populus_peu16798 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132610932, gene-LOC132622208 |
| Solanaceae | Solanum chilense | 1 | SOLCI004978600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011469, gene-LOC107031421 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.10373_chr07_-, STRG.17356_chr09_-, gene_4734 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G1598, TC02G2983, TC07G2682 |
| Zosteraceae | Zostera marina | 2 | Zosma05g23000.v3.1, Zosma06g02780.v3.1 |