Basic Information
Locus ID:
Lb3G15601
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 4983311 | 4989841 | - | Lb3G15601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 31,375.24 Da | 44.58 | 81.09 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 21 | 120 | 8.34653E-12 | - |
| CDD | cd00159 | RhoGAP | 181 | 269 | 3.2048E-15 | - |
| CDD | cd00159 | RhoGAP | 181 | 269 | 3.2048E-15 | - |
| CDD | cd00821 | PH | 21 | 120 | 8.34653E-12 | - |
| Pfam | PF00169 | PH domain | 20 | 124 | 6.6E-14 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 181 | 268 | 8.1E-12 | IPR000198 |
| Pfam | PF00620 | RhoGAP domain | 181 | 268 | 8.1E-12 | IPR000198 |
| Pfam | PF00169 | PH domain | 20 | 124 | 6.6E-14 | IPR001849 |
| SUPERFAMILY | SSF50729 | PH domain-like | 13 | 129 | 3.29E-19 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 268 | 2.75E-14 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 13 | 129 | 3.29E-19 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 268 | 2.75E-14 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 8 | 126 | 1.3E-18 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 151 | 278 | 1.7E-17 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 151 | 278 | 1.7E-17 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 8 | 126 | 1.3E-18 | IPR011993 |
| SMART | SM00233 | PH_update | 19 | 127 | 3.2E-16 | IPR001849 |
| SMART | SM00233 | PH_update | 19 | 127 | 3.2E-16 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 15.7531 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 285 | 13.152516 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 15.7531 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 285 | 13.152516 | IPR000198 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12150.2 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_016493886.1 | PREDICTED: rho GTPase-activating protein 6-like, partial [Nicotiana tabacum] | 0 |
| Q9FMP8 | Rho GTPase-activating protein 6 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067ELM7 | Rho GTPase-activating protein 7 (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0028192mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology