Basic Information
Locus ID:
Lb2G15417
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
acetyltransferase component of pyruvate dehydrogenase complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 486289195 | 486291221 | - | Lb2G15417 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 27,911.85 Da | 50.82 | 92.25 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06849 | lipoyl_domain | 94 | 166 | 3.0848E-29 | - |
| CDD | cd06849 | lipoyl_domain | 94 | 166 | 3.0848E-29 | - |
| Pfam | PF00364 | Biotin-requiring enzyme | 94 | 165 | 6.9E-16 | IPR000089 |
| Pfam | PF00364 | Biotin-requiring enzyme | 94 | 165 | 6.9E-16 | IPR000089 |
| SUPERFAMILY | SSF51230 | Single hybrid motif | 91 | 183 | 3.27E-25 | IPR011053 |
| SUPERFAMILY | SSF51230 | Single hybrid motif | 91 | 183 | 3.27E-25 | IPR011053 |
| Gene3D | G3DSA:2.40.50.100 | - | 88 | 191 | 3.1E-27 | - |
| Gene3D | G3DSA:2.40.50.100 | - | 88 | 191 | 3.1E-27 | - |
| ProSiteProfiles | PS50968 | Biotinyl/lipoyl domain profile. | 92 | 167 | 27.248871 | IPR000089 |
| ProSiteProfiles | PS50968 | Biotinyl/lipoyl domain profile. | 92 | 167 | 27.248871 | IPR000089 |
| ProSitePatterns | PS00189 | 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. | 117 | 146 | - | IPR003016 |
| ProSitePatterns | PS00189 | 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. | 117 | 146 | - | IPR003016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 215 | - | - |
KEGG Pathway
Pathway:
ko00010 (Glycolysis / Gluconeogenesis)
map00010 (Glycolysis / Gluconeogenesis)
ko00020 (Citrate cycle (TCA cycle))
map00020 (Citrate cycle (TCA cycle))
ko00620 (Pyruvate metabolism)
map00620 (Pyruvate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34430.1 | 2-oxoacid dehydrogenases acyltransferase family protein. | 0 |
| RefSeq | XP_021748807.1 | dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [Chenopodium quinoa] | 0 |
| Q9C8P0 | Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB3003 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P6PR56 | Putative dihydrolipoyllysine-residue acetyltransferase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0272111 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000013134 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G001150, COCNU_14G007100 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1284.V1.1, AsparagusV1_05.1496.V1.1 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g01930 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01234, Lb2G15417 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G017130 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG020310 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG07.1169 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26499 |