Basic Information
Locus ID:
Lb2G15163
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 462463795 | 462485511 | - | Lb2G15163 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 172,211.81 Da | 46.29 | 83.44 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 1391 | 1467 | 1.10519E-16 | IPR044730 |
| CDD | cd06222 | RNase_H_like | 1391 | 1467 | 1.10519E-16 | IPR044730 |
| CDD | cd02674 | Peptidase_C19R | 729 | 884 | 1.78279E-58 | - |
| CDD | cd02674 | Peptidase_C19R | 729 | 884 | 1.78279E-58 | - |
| Pfam | PF06337 | DUSP domain | 35 | 139 | 2.0E-23 | IPR006615 |
| Pfam | PF13456 | Reverse transcriptase-like | 1400 | 1470 | 1.5E-12 | IPR002156 |
| Pfam | PF13456 | Reverse transcriptase-like | 1400 | 1470 | 1.5E-12 | IPR002156 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 316 | 883 | 5.2E-87 | IPR001394 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1273 | 1337 | 1.8E-10 | IPR026960 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 316 | 883 | 5.2E-87 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 35 | 139 | 2.0E-23 | IPR006615 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1273 | 1337 | 1.8E-10 | IPR026960 |
| SUPERFAMILY | SSF143791 | DUSP-like | 12 | 139 | 1.09E-26 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 314 | 886 | 1.31E-108 | IPR038765 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1388 | 1467 | 1.34E-6 | IPR012337 |
| SUPERFAMILY | SSF143791 | DUSP-like | 12 | 139 | 1.09E-26 | IPR035927 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1388 | 1467 | 1.34E-6 | IPR012337 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 314 | 886 | 1.31E-108 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 152 | 236 | 2.0E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 303 | 539 | 1.4E-66 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 152 | 236 | 2.0E-12 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 4 | 151 | 1.5E-36 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 643 | 894 | 4.9E-56 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1389 | 1512 | 1.5E-7 | IPR036397 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 303 | 539 | 1.4E-66 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 643 | 894 | 4.9E-56 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 4 | 151 | 1.5E-36 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1389 | 1512 | 1.5E-7 | IPR036397 |
| SMART | SM00695 | dusp | 31 | 141 | 2.3E-33 | IPR006615 |
| SMART | SM00695 | dusp | 31 | 141 | 2.3E-33 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 12 | 138 | 18.134813 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 12 | 138 | 18.134813 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 316 | 886 | 57.88488 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 316 | 886 | 57.88488 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 317 | 332 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 828 | 845 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 317 | 332 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 828 | 845 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 987 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 987 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 987 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 944 | 958 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 944 | 958 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 959 | 987 | - | - |
| Coils | Coil | Coil | 1355 | 1375 | - | - |
| Coils | Coil | Coil | 1355 | 1375 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_034690367.1 | ubiquitin carboxyl-terminal hydrolase 5 [Vitis riparia] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | D7U6B4 | Ubiquitin carboxyl-terminal hydrolase OS=Vitis vinifera OX=29760 GN=VIT_00s0174g00150 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology