Basic Information
Locus ID:
Lb2G15130
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 460124529 | 460143295 | - | Lb2G15130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 143,244.23 Da | 46.40 | 74.86 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03552 | Cellulose synthase | 695 | 1211 | 8.1E-288 | IPR005150 |
| Pfam | PF14569 | Zinc-binding RING-finger | 445 | 497 | 1.7E-14 | IPR027934 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 305 | 5.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 305 | 5.4E-4 | IPR001680 |
| Pfam | PF03552 | Cellulose synthase | 695 | 1211 | 8.1E-288 | IPR005150 |
| Pfam | PF14569 | Zinc-binding RING-finger | 445 | 497 | 1.7E-14 | IPR027934 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 709 | 1205 | 9.19E-9 | IPR029044 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 709 | 1205 | 9.19E-9 | IPR029044 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 359 | 6.51E-29 | IPR036322 |
| SUPERFAMILY | SSF57850 | RING/U-box | 440 | 499 | 1.77E-22 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 440 | 499 | 1.77E-22 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 359 | 6.51E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 201 | 388 | 2.2E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 96 | 187 | 8.9E-7 | IPR015943 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 429 | 513 | 1.4E-19 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 96 | 187 | 8.9E-7 | IPR015943 |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 848 | 986 | 1.7E-14 | IPR029044 |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 848 | 986 | 1.7E-14 | IPR029044 |
| Gene3D | G3DSA:2.130.10.10 | - | 201 | 388 | 2.2E-11 | IPR015943 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 429 | 513 | 1.4E-19 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 95 | 1.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 95 | 1.1E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 51 | 90 | 87.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 160 | 0.081 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 160 | 0.081 | IPR001680 |
| SMART | SM00320 | WD40_4 | 320 | 359 | 97.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 51 | 90 | 87.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 305 | 2.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 7 | 47 | 0.53 | IPR001680 |
| SMART | SM00320 | WD40_4 | 320 | 359 | 97.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 7 | 47 | 0.53 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 305 | 2.4E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 270 | 305 | 9.889235 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 270 | 305 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 270 | 305 | 9.889235 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 270 | 305 | 11.845179 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1263 | 1287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1263 | 1287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1263 | 1280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1263 | 1280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 601 | - | - |
| Coils | Coil | Coil | 558 | 578 | - | - |
| Coils | Coil | Coil | 558 | 578 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18780.1 | cellulose synthase family protein. Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. | 0 |
| RefSeq | XP_034697280.1 | cellulose synthase A catalytic subunit 8 [UDP-forming] [Vitis riparia] | 0 |
| Q8LPK5 | Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana OX=3702 GN=CESA8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P9EA25 | Cellulose synthase OS=Juglans regia OX=51240 GN=LOC109011298 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology