Basic Information
Locus ID:
Lb2G15012
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
heterochromatin assembly
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 445383603 | 445387612 | - | Lb2G15012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 20,839.80 Da | 38.97 | 63.83 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 9 | 115 | 2.0E-17 | IPR001025 |
| Pfam | PF01426 | BAH domain | 9 | 115 | 2.0E-17 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 120 | 157 | 1.2E-8 | IPR019787 |
| Pfam | PF00628 | PHD-finger | 120 | 157 | 1.2E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 111 | 158 | 1.22E-14 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 111 | 158 | 1.22E-14 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 7 | 113 | 5.2E-26 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 165 | 3.0E-15 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 7 | 113 | 5.2E-26 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 165 | 3.0E-15 | IPR013083 |
| SMART | SM00249 | PHD_3 | 120 | 163 | 8.9E-4 | IPR001965 |
| SMART | SM00439 | BAH_4 | 8 | 116 | 1.9E-31 | IPR001025 |
| SMART | SM00439 | BAH_4 | 8 | 116 | 1.9E-31 | IPR001025 |
| SMART | SM00249 | PHD_3 | 120 | 163 | 8.9E-4 | IPR001965 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 2 | 116 | 19.678057 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 2 | 116 | 19.678057 | IPR001025 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_010686778.1 | chromatin remodeling protein EBS isoform X4 [Beta vulgaris subsp. vulgaris] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8Z630 | Chromatin remodeling protein EBS-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology