Basic Information
Locus ID:
Lb2G14947
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 437218148 | 437225145 | - | Lb2G14947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 99,394.10 Da | 38.99 | 78.20 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 423 | 478 | 3.01834E-26 | - |
| CDD | cd18635 | CD_CMT3_like | 423 | 478 | 3.01834E-26 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 423 | 477 | 4.3E-10 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 487 | 840 | 1.3E-35 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 423 | 477 | 4.3E-10 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 487 | 840 | 1.3E-35 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 422 | 478 | 5.86E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 322 | 840 | 8.23E-78 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 422 | 478 | 5.86E-12 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 322 | 840 | 8.23E-78 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 641 | 806 | 4.7E-238 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 88 | 265 | 1.0E-22 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 324 | 857 | 4.7E-238 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 88 | 265 | 1.0E-22 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 641 | 806 | 4.7E-238 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 324 | 857 | 4.7E-238 | - |
| SMART | SM00439 | BAH_4 | 173 | 280 | 3.9E-7 | IPR001025 |
| SMART | SM00439 | BAH_4 | 173 | 280 | 3.9E-7 | IPR001025 |
| SMART | SM00298 | chromo_7 | 422 | 481 | 2.4E-8 | IPR000953 |
| SMART | SM00298 | chromo_7 | 422 | 481 | 2.4E-8 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 491 | 837 | 2.0E-29 | IPR001525 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 491 | 837 | 2.0E-29 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 423 | 476 | 12.684201 | IPR000953 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 423 | 476 | 12.684201 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 322 | 847 | 44.516724 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 322 | 847 | 44.516724 | IPR001525 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 493 | 505 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 446 | 466 | - | IPR023779 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 446 | 466 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 493 | 505 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 536 | 550 | 5.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 536 | 550 | 5.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 323 | 339 | 5.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 323 | 339 | 5.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 582 | 595 | 5.3E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 582 | 595 | 5.3E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 95 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_010673524.2 | DNA (cytosine-5)-methyltransferase CMT3 [Beta vulgaris subsp. vulgaris] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0ZUS6 | Cytosine-specific methyltransferase OS=Herrania umbratica OX=108875 GN=LOC110412026 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology